Variants - Database of BRCA1 and BRCA2 sequence variants that have been clinically reclassified using a quantitative integrated evaluation - Leiden Open Variation Database

Database of BRCA1 and BRCA2 sequence variants that have been clinically reclassified using a quantitative integrated evaluation

Breast Cancer Type 1 susceptibility protein (BRCA1)

LOVD v.2.0 Build 22 [ Current LOVD status ]
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Curators: Julie Boyle and HCI / Tavtigian Lab

Patient data (#0000987)
Disease	-
Reference	United States:Salt Lake City
Template	DNA
Technique	SEQ
Remarks	-
# Reported	1
Submitter	Tiana Francy

Variant data
Allele	Unknown
Reported pathogenicity	-
Concluded pathogenicity	Unknown
Exon	20
DNA change	c.5278-1G>A
BIC DNA change	IVS20-1G>A
Protein change	-
Posterior P	0.697742959
IARC Class	3 - Uncertain
Key Observational Reference	Parsons et al 2019
Prior P reference	-
Missense analysis Prior P	-
Splicing prior P	0.34
Other Prior P	0.02
Combined prior P	0.34
Segregation LR	1.003853623
Pathology LR	3.73
Sum Family LR	1.112556859
Co-occurrence LR	1.075678821
case-control LR	-
Product of LRs	4.481094016
Comments	-
DB-ID	BRCA1_00455

1 entry in BRCA1

Path.

Allele

Exon

DNA change

BIC DNA change

Protein change

Posterior P

IARC Class

Key Observational Reference

Prior P reference

Missense analysis Prior P

Splicing prior P

Other Prior P

Combined prior P

Segregation LR

Pathology LR

Sum Family LR

Co-occurrence LR

case-control LR

Product of LRs

Comments

DB-ID

-

Unknown

20

IVS20-1G>A

-

0.697742959

3 - Uncertain

Parsons et al 2019

-

-

0.34

0.02

0.34

1.003853623

3.73

1.112556859

1.075678821

-

4.481094016

-

BRCA1_00455