Variants - Database of BRCA1 and BRCA2 sequence variants that have been clinically reclassified using a quantitative integrated evaluation - Leiden Open Variation Database

Database of BRCA1 and BRCA2 sequence variants that have been clinically reclassified using a quantitative integrated evaluation

Breast Cancer Type 1 susceptibility protein (BRCA1)

LOVD v.2.0 Build 22 [ Current LOVD status ]
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Curators: Julie Boyle and HCI / Tavtigian Lab

Patient data (#0001068)
Disease	-
Reference	United States:Salt Lake City
Template	DNA
Technique	SEQ
Remarks	-
# Reported	1
Submitter	Tiana Francy

Variant data
Allele	Unknown
Reported pathogenicity	-
Concluded pathogenicity	-
Exon	17
DNA change	c.5074+2T>C
BIC DNA change	IVS17+2T>C
Protein change	-
Posterior P	0.999563022
IARC Class	5 - Pathogenic
Key Observational Reference	Parsons et al 2019
Prior P reference	-
Missense analysis Prior P	-
Splicing prior P	0.97
Other Prior P	0.02
Combined prior P	0.97
Segregation LR	2.4319
Pathology LR	3.73
Sum Family LR	7.307473789
Co-occurrence LR	1.067279157
case-control LR	-
Product of LRs	70.74566595
Comments	-
DB-ID	BRCA1_00536

1 entry in BRCA1

Path.

Allele

Exon

DNA change

BIC DNA change

Protein change

Posterior P

IARC Class

Key Observational Reference

Prior P reference

Missense analysis Prior P

Splicing prior P

Other Prior P

Combined prior P

Segregation LR

Pathology LR

Sum Family LR

Co-occurrence LR

case-control LR

Product of LRs

Comments

DB-ID

-

Unknown

17

IVS17+2T>C

-

0.999563022

5 - Pathogenic

Parsons et al 2019

-

-

0.97

0.02

0.97

2.4319

3.73

7.307473789

1.067279157

-

70.74566595

-

BRCA1_00536