Variants - Database of BRCA1 and BRCA2 sequence variants that have been clinically reclassified using a quantitative integrated evaluation - Leiden Open Variation Database

Database of BRCA1 and BRCA2 sequence variants that have been clinically reclassified using a quantitative integrated evaluation

Breast Cancer Type 2 susceptibility protein (BRCA2)

LOVD v.2.0 Build 22 [ Current LOVD status ]
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Curators: Julie Boyle and HCI / Tavtigian Lab

Patient data (#0001551)
Disease	-
Reference	United States:Salt Lake City
Template	DNA
Technique	SEQ
Remarks	-
# Reported	1
Submitter	Tiana Francy

Variant data
Allele	Unknown
Reported pathogenicity	-
Concluded pathogenicity	-
Exon	5
DNA change	c.475+1G>T
BIC DNA change	IVS5+1G>T
Protein change	-
Posterior P	0.998543659
IARC Class	5 - Pathogenic
Key Observational Reference	Parsons et al 2019
Prior P reference	-
Missense analysis Prior P	-
Splicing prior P	0.97
Other Prior P	0.02
Combined prior P	0.97
Segregation LR	1.8997
Pathology LR	-
Sum Family LR	9.189283103
Co-occurrence LR	1.214750213
case-control LR	-
Product of LRs	21.20575004
Comments	-

1 entry in BRCA2

Path.

Allele

Exon

DNA change

BIC DNA change

Protein change

Posterior P

IARC Class

Key Observational Reference

Prior P reference

Missense analysis Prior P

Splicing prior P

Other Prior P

Combined prior P

Segregation LR

Pathology LR

Sum Family LR

Co-occurrence LR

case-control LR

Product of LRs

Comments

-

Unknown

5

IVS5+1G>T

-

0.998543659

5 - Pathogenic

Parsons et al 2019

-

-

0.97

0.02

0.97

1.8997

-

9.189283103

1.214750213

-

21.20575004

-